All functions

GLMnetToGraph()

Convert the result of imputedGLMnetwork or a matrix into a network.

GLMnetwork()

Infer a network from RNA-seq expression.

summary(<GLMpath>) print(<GLMpath>)

Methods for 'GLMpath' objects.

summary(<HDimputed>) print(<HDImputed>)

Methods for 'HDImputed' objects.

summary(<HDpath>) print(<HDpath>) plot(<HDpath>)

Methods for 'HDpath' objects.

RNAseqNetUsersGuide()

View RNAseqNet User's Guide

chooseSigma()

Select the threshold sigma for hd-MI.

imputeHD()

Impute missing row datasets with multiple hot deck.

imputedGLMnetwork()

Multiple hot-deck imputation and network inference from RNA-seq data.

lung

RNA-seq expression from lung tissue (GTEx).

stabilitySelection()

Selection of the regularization parameter by StARS (Liu et al., 2010).

summary(<stars>) print(<stars>) plot(<stars>)

Methods for 'stars' objects.

thyroid

RNA-seq expression from thyroid tissue (GTEx).

varIntra()

Average intra-donor pool variance.